Filenames_1_1_sequence.txt
s_1_2_sequence.txt
s_1_1_extracted.txt
s_1_2_extracted.txt
Read Grouporiginal_1extracted_1
Librarylib1lib2
Sampleoriginalextracted
Flowcelloriginalextracted
Lane11
Date Sequenced13 August 201013 August 2010
File TypeFASTQFASTQ
Quality EncodingPhred+64Phred+33
Run ConditionsPaired End - 72/72bpPaired End - 72/72bp
Predicted Insert131131
# Reads22,223,94422,223,944
# bp3,200,247,9363,200,247,936
Quality/Cycle
Observed Qualities
Base/Cycle
Aligned Reads16,536,77116,536,771
% Reads Aligned74.4%74.4%
Aligned bp2,381,295,0242,381,295,024
% bp Aligned74.4%74.4%
Observed Insert Sizes

bam2fastq_test_hg18.bam

BAM Version: 1.0
Sort Order: unsorted
Read Groups
IDSampleLibraryPlatform UnitPredicted InsertSequencing CenterDate SequencedPlatform
original_1originallib1original.1131HudsonAlpha2010-08-13illumina
extracted_1extractedlib2extracted.1131HudsonAlpha2010-08-13illumina
Program
IDVersionCommand Line
analyze_illumina0.5.6/opt/HAIB/levylab/bin/analyze_illumina -o bam2fastq_test -p8 -ghg18 -foriginal -llib1 -soriginal s_1_1_sequence.txt -fextracted -llib2 -sextracted s_1_1_extracted.txt
Comments
RG original_1 aligner: Bowtie v0.12.5
RG original_1 command line: "bowtie -q --phred64-quals -I 0 -X 318 -p8 --best --sam --sam-RG ID:original_1 --sam-RG SM:original --sam-RG LB:lib1 --sam-RG DT:2010-08-13 --sam-RG PU:original.1 --sam-RG PI:131 --sam-RG CN:HudsonAlpha --sam-RG PL:illumina hg18 -1 s_1_1_sequence.txt -2 s_1_2_sequence.txt original_hg18_original_1.sam"
RG extracted_1 aligner: Bowtie v0.12.5
RG extracted_1 command line: "bowtie -q --phred33-quals -I 0 -X 318 -p8 --best --sam --sam-RG ID:extracted_1 --sam-RG SM:extracted --sam-RG LB:lib2 --sam-RG DT:2010-08-13 --sam-RG PU:extracted.1 --sam-RG PI:131 --sam-RG CN:HudsonAlpha --sam-RG PL:illumina hg18 -1 s_1_1_extracted.txt -2 s_1_2_extracted.txt extracted_hg18_extracted_1.sam"
Reference
NameLength
chr1247249719
chr1_random1663265
chr2242951149
chr2_random185571
chr3199501827
chr3_random749256
chr4191273063
chr4_random842648
chr5180857866
chr5_random143687
chr6170899992
chr6_random1875562
chr7158821424
chr7_random549659
chr8146274826
chr8_random943810
chr9140273252
chr9_random1146434
chr10135374737
chr10_random113275
chr11134452384
chr11_random215294
chr12132349534
chr13114142980
chr13_random186858
chr14106368585
chr15100338915
chr15_random784346
chr1688827254
chr16_random105485
chr1778774742
chr17_random2617613
chr1876117153
chr18_random4262
chr1963811651
chr19_random301858
chr2062435964
chr2146944323
chr21_random1679693
chr2249691432
chr22_random257318
chrM16571
chrX154913754
chrX_random1719168
chrY57772954
FilenameMD5Size
original/s_1_1_sequence.txt
6f3d6df21df3b517da914a498169c5b6
4.69 GB
original/s_1_2_sequence.txt
f8d93409dd46aaeace4f0106903cac3d
4.69 GB
extracted/s_1_1_extracted.txt
5178301a23f4dcf6272fb268205c1158
3.89 GB
extracted/s_1_2_extracted.txt
f5f43d0e2e7b83f055176ac85b48190a
3.89 GB
bam2fastq_test_hg18.bam
ce79ce01a2f17110c2d3632fc8433593
3.62 GB
bam2fastq_test_hg18.bam.bai
e39c049d7fc98481c63965c931147fee
6.11 MB
md5sum file (for automated checks)